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It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.

It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models.

Phylogeographic Diffusion in Continuous Space, WNVīEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC.

Phylogeographic Diffusion in Continuous Space, YFV.

Phylogeographic Diffusion in Discrete Space.

Analysing datasets with tens of thousands of taxa.

Phylogeography with individual travel history.

Hierarchical Phylogenetic Model Tutorial.